STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61450.1HAMP domain protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain. (598 aa)    
Predicted Functional Partners:
AQM58701.1
Helix-turn-helix domain protein; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
 
 
 0.995
AQM61053.1
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.961
AQM58922.1
Helix-turn-helix domain protein; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
 
 
 0.958
AQM59313.1
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.941
AQM58829.1
HAMP domain protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
  
  
 
0.927
AQM59396.1
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.784
NPD11_324
[KT] COG3279 Response regulator of the LytR/AlgR family.
 
  
 0.760
AQM59962.1
[KT] COG3279 Response regulator of the LytR/AlgR family.
 
  
 0.744
AQM60442.1
[KT] COG3279 Response regulator of the LytR/AlgR family.
 
  
 0.726
NPD11_632
[KT] COG3279 Response regulator of the LytR/AlgR family.
 
  
 0.677
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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