STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59472.1B12 binding domain protein; [C] COG1032 Fe-S oxidoreductase. (449 aa)    
Predicted Functional Partners:
AQM59313.1
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
       0.433
selO
Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.417
galT
galT_2: galactose-1-phosphate uridylyltransferase; [G] COG4468 Galactose-1-phosphate uridyltransferase.
  
    0.413
NPD11_56
Radical SAM superfamily protein; [O] COG1180 Pyruvate-formate lyase-activating enzyme.
  
     0.409
AQM58899.1
Stage II sporulation family protein; [M] COG3409 Putative peptidoglycan-binding domain-containing protein.
  
    0.401
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.