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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59916.1fliB family protein. (408 aa)    
Predicted Functional Partners:
selO
Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.550
AQM61335.1
Hypothetical protein.
  
     0.534
AQM60112.1
Hypothetical protein.
       0.500
NPD11_633
Pentapeptide repeats family protein; [S] COG1357 Uncharacterized low-complexity proteins.
  
    0.433
NPD11_888
Acetyltransferase family protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.432
AQM58936.1
Anti-sigma factor family protein.
  
  
 0.430
AQM60168.1
Glycosyl hydrolases 25 family protein; [M] COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.429
AQM61046.1
Signal peptidase (SPase) II family protein.
 
     0.412
araD
araD: L-ribulose-5-phosphate 4-epimerase; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
    0.400
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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