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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59306.1Hypothetical protein. (332 aa)    
Predicted Functional Partners:
plc
Phospholipase C.
  
    0.584
AQM60044.1
Hypothetical protein.
  
     0.529
NPD11_655
Pentapeptide repeats family protein; [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
  
     0.469
AQM61027.1
Conserved hypothetical protein; [S] COG3864 Uncharacterized protein conserved in bacteria.
  
     0.456
AQM59071.1
Hypothetical protein.
       0.437
AQM61069.1
C_GCAxxG_C_C: C_GCAxxG_C_C family protein.
  
     0.433
AQM61415.1
Sigma-54 interaction domain protein; [R] COG0714 MoxR-like ATPases.
  
     0.432
AQM60586.1
Bacterial regulatory s, crp family protein; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
  
    0.430
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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