STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureGureG: urease accessory protein UreG; [OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase. (203 aa)    
Predicted Functional Partners:
AQM60917.1
ureF family protein; [O] COG0830 Urease accessory protein UreF.
 
 
 0.994
AQM59089.1
[O] COG0829 Urease accessory protein UreH.
 
 
 0.989
AQM59627.1
Hypothetical protein; ureE urease accessory, C-terminal domain protein; [O] COG2371 Urease accessory protein UreE.
 
 
 0.977
ureC
Urease_alph: urease, alpha subunit; [E] COG0804 Urea amidohydrolase (urease) alpha subunit.
 
  
 0.965
ureA
Urease subunit gamma; [E] COG0831 Urea amidohydrolase (urease) gamma subunit.
 
  
 0.961
ureB
Urease subunit beta; [E] COG0832 Urea amidohydrolase (urease) beta subunit.
 
  
 0.953
NPD11_335
Hypothetical protein.
  
 
 0.750
amt
Amt: ammonium transporter family protein; [P] COG0004 Ammonia permease.
     
 0.667
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
     
 0.516
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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