STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amtAmt: ammonium transporter family protein; [P] COG0004 Ammonia permease. (392 aa)    
Predicted Functional Partners:
AQM59089.1
[O] COG0829 Urease accessory protein UreH.
     
 0.678
ureG
ureG: urease accessory protein UreG; [OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase.
     
 0.667
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.650
AQM59676.1
GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
  
 0.597
AQM61128.1
Aconitase C-terminal domain protein; [C] COG1048 Aconitase A.
  
 
 0.532
AQM59627.1
Hypothetical protein; ureE urease accessory, C-terminal domain protein; [O] COG2371 Urease accessory protein UreE.
     
 0.530
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.507
AQM60451.1
Glutamine synthetase, catalytic domain protein; [E] COG0174 Glutamine synthetase.
  
  
 0.503
aspB
Fumarase C family protein; [E] COG1027 Aspartate ammonia-lyase.
   
  
 0.503
ureC
Urease_alph: urease, alpha subunit; [E] COG0804 Urea amidohydrolase (urease) alpha subunit.
     
 0.493
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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