STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61316.1Conserved hypothetical protein; [S] COG2323 Predicted membrane protein. (236 aa)    
Predicted Functional Partners:
AQM61405.1
Hypothetical protein.
       0.836
AQM59424.1
Phosphoribulokinase / Uridine kinase family protein; [F] COG0572 Uridine kinase.
       0.669
spoIIP
spore_II_P: stage II sporulation P family protein.
  
     0.663
spoVAC
spore_V_AC: stage V sporulation protein AC.
 
  
 0.662
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.655
spoVAD
spore_V_AD: stage V sporulation protein AD.
 
  
 0.651
AQM61391.1
GerA spore germination family protein.
 
  
 0.620
ytfJ
spore_ytfJ: sporulation protein YtfJ; [S] COG3874 Uncharacterized conserved protein.
  
     0.607
spoVAE
spore_V_AE: stage V sporulation protein AE.
 
  
 0.598
spoIIE
spore_II_E: stage II sporulation protein E; [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.591
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.