STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61435.1spoVR like family protein; [S] COG2719 Uncharacterized conserved protein. (461 aa)    
Predicted Functional Partners:
AQM61412.1
prkA AAA domain protein; [T] COG2766 Putative Ser protein kinase.
 
  
 0.993
yhbH
spore_yhbH: sporulation protein YhbH; [S] COG2718 Uncharacterized conserved protein; Belongs to the UPF0229 family.
 
  
 0.992
AQM58985.1
Rubrerythrin family protein; [C] COG1592 Rubrerythrin.
       0.722
AQM60382.1
Hypothetical protein.
       0.572
AQM60212.1
Hypothetical protein.
       0.510
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
   
  
 0.505
NPD11_867
Barstar family protein; [K] COG2732 Barstar, RNAse (barnase) inhibitor.
   
    0.422
spo0A
Sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
      
 0.404
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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