STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59222.1CBS domain protein; [P] COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain). (419 aa)    
Predicted Functional Partners:
AQM60640.1
Hypothetical protein.
       0.618
AQM60647.1
Putative M18 family aminopeptidase 1; [E] COG1362 Aspartyl aminopeptidase.
      
 0.606
AQM61512.1
Aminopeptidase I zinc metalloprotease family protein; [E] COG1362 Aspartyl aminopeptidase.
      
 0.606
AQM60884.1
Rhomboid family protein; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
 
 
 
 0.606
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.438
leuS
leuS_bact: leucine--tRNA ligase; [J] COG0495 Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.409
AQM59513.1
Putative membrane protein.
       0.407
NPD11_773
trkA-C domain protein; [P] COG0475 Kef-type K+ transport systems, membrane components.
     
 0.403
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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