STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60020.1degV: EDD, DegV family domain protein; [S] COG1307 Uncharacterized protein conserved in bacteria. (280 aa)    
Predicted Functional Partners:
NPD11_194
yloV: DAK2 domain fusion YloV family protein; [R] COG1461 Predicted kinase related to dihydroxyacetone kinase.
 
 0.979
AQM59326.1
spoU rRNA Methylase family protein; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
  
    0.820
AQM60462.1
Basic membrane family protein; [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
  
    0.703
splB
photo_TT_lyase: spore photoproduct lyase; [L] COG1533 DNA repair photolyase.
       0.599
NPD11_193
Asp23 family protein; [S] COG1302 Uncharacterized protein conserved in bacteria.
 
    0.591
rpoN
rpoN_sigma: RNA polymerase sigma-54 factor; [K] COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog.
       0.579
AQM60272.1
Pglycolate_arch: phosphoglycolate phosphatase, TA0175-type; [R] COG0561 Predicted hydrolases of the HAD superfamily.
       0.524
cggR
Putative sugar-binding domain protein; [K] COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain.
 
     0.482
spo0A
Sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
   
    0.403
rpmI
rpmI_bact: ribosomal protein L35; [J] COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
   
    0.400
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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