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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoNrpoN_sigma: RNA polymerase sigma-54 factor; [K] COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog. (460 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.941
AQM59932.1
Sigma-54 interaction domain protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
 
 
 
 0.941
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.937
NPD11_531
AAA domain family protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
 
 
 
 0.937
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.932
AQM61142.1
Lin1832 protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
 
 
 
 0.919
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.914
NPD11_267
AAA domain family protein; [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains.
 
  
 0.889
AQM58859.1
AAA domain family protein; [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism.
 
   
 0.821
AQM60058.1
AAA domain family protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
 
   
 0.729
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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