STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59068.1Hypothetical protein. (129 aa)    
Predicted Functional Partners:
NPD11_188
[RTKL] COG0515 Serine/threonine protein kinase.
   
 
 0.962
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
  
 
 0.821
AQM61214.1
Hypothetical protein.
 
     0.743
NPD11_154
spoVD_pbp: stage V sporulation protein D; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
   
 
 0.674
AQM58729.1
Hypothetical protein.
 
 
 
 0.558
AQM61368.1
Ribosomal RNA adenine dimethylase family protein.
  
     0.542
AQM61046.1
Signal peptidase (SPase) II family protein.
 
     0.534
NPD11_99
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
 
  
 0.515
AQM61335.1
Hypothetical protein.
  
     0.512
greA-2
Transcription elongation factor GreA domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.498
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.