STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_270Fusaric acid resistance -like family protein; [S] COG1289 Predicted membrane protein. (627 aa)    
Predicted Functional Partners:
NPD11_271
Hypothetical protein.
       0.501
AQM61520.1
Fibronectin type III domain protein.
  
     0.475
NPD11_272
Hypothetical protein.
       0.472
AQM60183.1
nifU-like N terminal domain protein; [C] COG0822 NifU homolog involved in Fe-S cluster formation.
   
    0.459
nifU
nifU_clost: FeS cluster assembly scaffold protein NifU; [C] COG0822 NifU homolog involved in Fe-S cluster formation.
   
    0.459
ilvE
ilvE_II: branched-chain amino acid aminotransferase; [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.
       0.448
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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