STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61474.1NADH:flavin oxidoreductase / NADH oxidase family protein; [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (370 aa)    
Predicted Functional Partners:
AQM59266.1
[C] COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.570
AQM61407.1
[C] COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.570
NPD11_658
carD-like/TRCF domain protein; [K] COG1329 Transcriptional regulators, similar to M. xanthus CarD.
   
    0.507
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
  
  
 0.456
AQM60761.1
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
   
 
 0.449
AQM58770.1
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
   
 
 0.447
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
 
  
 0.445
trxB
TRX_reduct: thioredoxin-disulfide reductase; [O] COG0492 Thioredoxin reductase.
 
  
 0.441
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.438
tuf-2
EF-Tu: translation elongation factor Tu; [J] COG0050 GTPases - translation elongation factors.
   
    0.438
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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