STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60897.1ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components. (577 aa)    
Predicted Functional Partners:
AQM59418.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
 
0.983
NPD11_115
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [E] COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
     
0.731
NPD11_758
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 
 
0.545
AQM59140.1
trkA-C domain protein; [P] COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain.
       0.470
AQM61104.1
hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators.
  
    0.466
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.448
AQM59008.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
     
0.443
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
 
 
 0.440
AQM59051.1
Miro-like family protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.
 
 
 0.406
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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