STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59238.1[R] COG0457 FOG: TPR repeat. (460 aa)    
Predicted Functional Partners:
AQM60003.1
[T] COG0642 Signal transduction histidine kinase.
  
 
 0.982
NPD11_665
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.982
AQM58665.1
cheW-like domain protein; [NT] COG0835 Chemotaxis signal transduction protein.
  
 
 0.926
AQM59415.1
cheW-like domain protein; [NT] COG0835 Chemotaxis signal transduction protein.
  
 
 0.926
AQM59676.1
GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 
 0.922
AQM60238.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
  
 
 0.913
NPD11_331
[NT] COG0840 Methyl-accepting chemotaxis protein.
  
 
 0.913
AQM61419.1
cheR methyltransferase, SAM binding domain protein; [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins.
  
  
 0.906
AQM58829.1
HAMP domain protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
   
 
 0.893
NPD11_701
GGDEF: diguanylate cyclase domain protein; [T] COG2206 HD-GYP domain.
  
 
 0.849
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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