STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60240.1rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain protein; [R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase). (451 aa)    
Predicted Functional Partners:
AQM60986.1
Hypothetical protein.
 
 
 
 0.995
AQM59658.1
Insulinase family protein; [R] COG0612 Predicted Zn-dependent peptidases.
       0.836
AQM60798.1
Beta-eliminating lyase family protein; [E] COG1982 Arginine/lysine/ornithine decarboxylases.
 
     0.755
AQM59719.1
Conserved hypothetical protein; [R] COG2384 Predicted SAM-dependent methyltransferase.
  
     0.523
NPD11_199
Putative archaeal/vacuolar-type H+-ATPase subunit H; [D] COG3599 Cell division initiation protein.
  
     0.517
AQM58700.1
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
  
     0.513
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
    0.493
hemZ
rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ; [H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases.
 
     0.475
AQM58909.1
ybbR-like family protein; [S] COG4856 Uncharacterized protein conserved in bacteria.
  
     0.452
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
     
 0.450
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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