STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60798.1Beta-eliminating lyase family protein; [E] COG1982 Arginine/lysine/ornithine decarboxylases. (473 aa)    
Predicted Functional Partners:
AQM60240.1
rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain protein; [R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase).
 
     0.755
NPD11_301
Aluminum resistance protein; [P] COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance.
 
   
 0.750
AQM59658.1
Insulinase family protein; [R] COG0612 Predicted Zn-dependent peptidases.
       0.607
AQM60986.1
Hypothetical protein.
 
     0.561
AQM59158.1
[F] COG0125 Thymidylate kinase.
 
    0.555
AQM58992.1
Hypothetical protein.
       0.533
AQM61415.1
Sigma-54 interaction domain protein; [R] COG0714 MoxR-like ATPases.
   
 
 0.531
sepF
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
     0.419
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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