STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59807.1asnC family protein; [K] COG1522 Transcriptional regulators. (160 aa)    
Predicted Functional Partners:
AQM61493.1
Aminotransferase class-V family protein; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
 
  
 0.954
NPD11_111
cys/Met metabolism PLP-dependent enzyme family protein; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
 
  
 0.748
AQM59310.1
matE: MATE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump.
  
    0.647
AQM59179.1
hisJ_fam: histidinol phosphate phosphatase, HisJ family protein; [ER] COG1387 Histidinol phosphatase and related hydrolases of the PHP family; Belongs to the PHP hydrolase family. HisK subfamily.
 
    0.540
AQM59837.1
PHP domain protein; [ER] COG1387 Histidinol phosphatase and related hydrolases of the PHP family.
  
    0.460
cobA
cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase; [H] COG0007 Uroporphyrinogen-III methylase.
  
  
 0.435
AQM58652.1
Hypothetical protein.
       0.431
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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