STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59376.1Membrane transport family protein; [R] COG0679 Predicted permeases. (355 aa)    
Predicted Functional Partners:
AQM61381.1
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein; [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
    0.934
NPD11_580
Malic enzyme, NAD binding domain protein; [C] COG0281 Malic enzyme.
  
  
 0.759
AQM60405.1
Sensory box protein; [T] COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism.
 
     0.654
AQM60996.1
[KT] COG4565 Response regulator of citrate/malate metabolism.
 
     0.576
AQM58652.1
Hypothetical protein.
       0.437
AQM59837.1
PHP domain protein; [ER] COG1387 Histidinol phosphatase and related hydrolases of the PHP family.
       0.428
tdc
tyr_de_CO2_Ent: tyrosine decarboxylase; [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
  
     0.412
tdc-2
tyr_de_CO2_Ent: tyrosine decarboxylase; [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
  
     0.412
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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