STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60818.1Response regulator; [T] COG0784 FOG: CheY-like receiver. (185 aa)    
Predicted Functional Partners:
AQM61304.1
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.892
AQM60003.1
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.823
NPD11_665
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.799
NPD11_94
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 
 0.797
NPD11_794
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.796
AQM59022.1
[T] COG0642 Signal transduction histidine kinase.
 
 
 
 0.791
AQM61498.1
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.786
AQM59238.1
[R] COG0457 FOG: TPR repeat.
 
 
 0.786
AQM60227.1
[T] COG2205 Osmosensitive K+ channel histidine kinase.
   
 
 0.784
AQM60597.1
[T] COG0642 Signal transduction histidine kinase.
 
 
 
 0.775
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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