STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60523.1Hypothetical protein. (82 aa)    
Predicted Functional Partners:
hydE
rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE; [H] COG0502 Biotin synthase and related enzymes.
 
  
 0.958
hydF
GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF; [R] COG1160 Predicted GTPases.
 
   
 0.935
hydG
rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG; [HR] COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes.
 
   
 0.904
hydG-2
rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG; [HR] COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes.
 
   
 0.884
AQM61041.1
Periplasmic binding family protein; [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
 
 0.607
AQM61088.1
Periplasmic binding family protein; [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
 
 0.607
AQM60181.1
Periplasmic binding family protein; [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
 
 0.607
NPD11_261
Periplasmic binding family protein; [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
 
 0.607
AQM60023.1
[P] COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.594
AQM61236.1
fecCD transport family protein; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.594
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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