STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydFGTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF; [R] COG1160 Predicted GTPases. (399 aa)    
Predicted Functional Partners:
hydE
rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE; [H] COG0502 Biotin synthase and related enzymes.
   
 0.987
hydG-2
rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG; [HR] COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes.
  
 0.975
hydG
rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG; [HR] COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes.
  
 0.968
AQM60523.1
Hypothetical protein.
 
   
 0.935
AQM60963.1
[R] COG4624 Iron only hydrogenase large subunit, C-terminal domain.
 
   
 0.779
AQM60659.1
Hypothetical protein; Iron only hydrogenase large subunit, C-terminal domain protein; [R] COG4624 Iron only hydrogenase large subunit, C-terminal domain.
 
   
 0.720
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
  
 0.697
gpsA
Ketopantoate reductase PanE/ApbA family protein; [C] COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.686
typA
typA_BipA: GTP-binding protein TypA/BipA; [T] COG1217 Predicted membrane GTPase involved in stress response.
  
  
 0.582
cmk
Cmk: cytidylate kinase; [F] COG0283 Cytidylate kinase.
  
  
 0.580
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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