STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytaFPutative sporulation protein YtaF; Probably functions as a manganese efflux pump. (205 aa)    
Predicted Functional Partners:
yabP
spore_yabP: sporulation protein YabP.
  
   
 0.559
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.557
AQM60489.1
Conserved hypothetical protein; [S] COG1289 Predicted membrane protein.
 
     0.526
AQM59796.1
Hypothetical protein.
       0.526
AQM59489.1
HAD-SF-IIB: HAD hydrolase, IIB family protein; [R] COG0561 Predicted hydrolases of the HAD superfamily.
       0.511
spoVAD
spore_V_AD: stage V sporulation protein AD.
  
    0.495
spoIIR
spore_II_R: stage II sporulation protein R.
 
     0.483
spoIVB
spore_IV_B: stage IV sporulation protein B; [M] COG0750 Predicted membrane-associated Zn-dependent proteases 1.
  
     0.476
yyaC
spore_YyaC: putative sporulation protein YyaC.
  
   
 0.472
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.470
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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