STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_286Glycosyl hydrolase 1 family protein; [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; Belongs to the glycosyl hydrolase 1 family. (471 aa)    
Predicted Functional Partners:
AQM60579.1
[G] COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.
  
 0.917
ptbA
PTBA: PTS system, glucose subfamily, IIA component domain protein; [G] COG2190 Phosphotransferase system IIA components.
  
 
 0.907
AQM61485.1
badF/BadG/BcrA/BcrD ATPase family protein; [KG] COG1940 Transcriptional regulator/sugar kinase.
  
 
 0.905
AQM59526.1
badF/BadG/BcrA/BcrD ATPase family protein; [KG] COG1940 Transcriptional regulator/sugar kinase.
  
 
 0.905
pgi
Phosphoglucose isomerase family protein; [G] COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.904
pgcA
Hypothetical protein; Phosphoglucomutase/phosphomannomutase, C-terminal domain protein; [G] COG1109 Phosphomannomutase.
     
  0.900
licB
Pts-lac: PTS system, lactose/cellobiose family IIB component domain protein; [G] COG1440 Phosphotransferase system cellobiose-specific component IIB.
  
 
 0.775
AQM58670.1
PTS system, Lactose/Cellobiose specific IIB subunit; [G] COG1440 Phosphotransferase system cellobiose-specific component IIB.
  
 
 0.771
AQM59256.1
PTS system, Lactose/Cellobiose specific IIB subunit; [G] COG1440 Phosphotransferase system cellobiose-specific component IIB.
  
 
 0.771
AQM60147.1
PTS system, Lactose/Cellobiose specific IIA subunit; [G] COG1447 Phosphotransferase system cellobiose-specific component IIA.
  
 
 0.743
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.