Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQM60743.1ABC 3 transport family protein; [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components. (263 aa)    
Predicted Functional Partners:
AQM59105.1
ABC transporter family protein; [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component.
 
 0.999
AQM59891.1
Periplasmic solute binding family protein; [P] COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.
 
 0.991
AQM58961.1
Periplasmic solute binding family protein; [P] COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin.
 
  
 0.885
AQM59570.1
Ferric uptake regulator family protein; [P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
 
  
 0.676
NPD11_936
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein; [E] COG0765 ABC-type amino acid transport system, permease component.
   
 
 0.557
AQM59929.1
Hypothetical protein.
       0.550
AQM59986.1
Hypothetical protein.
       0.540
AQM59952.1
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein; [E] COG0765 ABC-type amino acid transport system, permease component.
  
 
 0.529
pepF
pepF: oligoendopeptidase F; [E] COG1164 Oligoendopeptidase F.
  
    0.514
NPD11_475
Ferric uptake regulator family protein; [P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
 
  
 0.447
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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