STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepFpepF: oligoendopeptidase F; [E] COG1164 Oligoendopeptidase F. (599 aa)    
Predicted Functional Partners:
AQM59929.1
Hypothetical protein.
       0.708
AQM60743.1
ABC 3 transport family protein; [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
  
    0.534
AQM59105.1
ABC transporter family protein; [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component.
       0.534
purB
purB: adenylosuccinate lyase; [F] COG0015 Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.468
AQM59986.1
Hypothetical protein.
       0.406
AQM59642.1
Peptidase M28 family protein; [R] COG2234 Predicted aminopeptidases.
  
  
 0.405
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.