STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60884.1Rhomboid family protein; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid). (323 aa)    
Predicted Functional Partners:
NPD11_939
SPFH domain / Band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
  
 0.894
AQM58812.1
Putative membrane protein.
       0.785
NPD11_993
TPR repeat family protein.
   
 
 0.718
AQM59252.1
[N] COG5492 Bacterial surface proteins containing Ig-like domains.
  
 
 0.638
AQM60298.1
PPIC-type PPIASE domain protein; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
  
 
 0.638
AQM60312.1
MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase; [H] COG0212 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.624
AQM59222.1
CBS domain protein; [P] COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain).
 
 
 
 0.606
NPD11_279
Rhodanese-like domain protein; [P] COG0607 Rhodanese-related sulfurtransferase.
  
 
 0.598
NPD11_701
GGDEF: diguanylate cyclase domain protein; [T] COG2206 HD-GYP domain.
  
 
 0.572
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
   
   0.569
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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