STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60506.1[M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis. (462 aa)    
Predicted Functional Partners:
AQM60866.1
sseB C-terminal domain protein.
  
 
 0.638
NPD11_554
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
  
 
 0.638
NPD11_993
TPR repeat family protein.
     
 0.631
NPD11_146
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
 
 
 0.626
AQM60925.1
Glycosyl hydrolases 8 family protein.
 
  
 0.574
AQM61144.1
[T] COG2200 FOG: EAL domain.
  
  
 0.529
AQM60848.1
Conserved hypothetical protein; [G] COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
  
     0.526
bdhA
NADH-dependent butanol dehydrogenase A; [C] COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family.
  
    0.522
AQM60134.1
Conserved hypothetical protein; [S] COG5298 Uncharacterized protein conserved in bacteria.
 
  
 0.520
NPD11_701
GGDEF: diguanylate cyclase domain protein; [T] COG2206 HD-GYP domain.
  
  
 0.517
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.