STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhaB3[Q] COG4910 Propanediol dehydratase, small subunit. (140 aa)    
Predicted Functional Partners:
dhaB
[Q] COG4909 Propanediol dehydratase, large subunit.
 
 0.999
gldB
Glycerol dehydrase beta subunit; [Q] COG4909 Propanediol dehydratase, large subunit.
 
 0.999
AQM59836.1
Dehydratase medium subunit.
 
  
 0.981
dhaB4
reactive_PduG: diol dehydratase reactivase alpha subunit.
 
  
 0.959
dhaT
[C] COG1454 Alcohol dehydrogenase, class IV.
  
 
 0.939
AQM60827.1
Conserved hypothetical protein; [R] COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol.
 
   
 0.904
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
     
  0.900
AQM60466.1
ATP:cob(I)alamin adenosyltransferase; pduO_Nterm: ATP:cob(I)alamin adenosyltransferase; [S] COG2096 Uncharacterized conserved protein; Belongs to the Cob(I)alamin adenosyltransferase family.
 
   
 0.893
AQM59015.1
Histidine kinase family protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
   
 0.682
eutJ
eutJ: ethanolamine utilization EutJ family protein; [E] COG4820 Ethanolamine utilization protein, possible chaperonin.
  
    0.586
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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