STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqfCspore_yqfC: sporulation protein YqfC. (95 aa)    
Predicted Functional Partners:
yqfD
spore_yqfD: sporulation protein YqfD.
 
  
 0.991
spoIIIAD
spore_III_AD: stage III sporulation protein AD.
  
  
 0.849
spoIIIAC
spore_III_AC: stage III sporulation protein AC.
  
  
 0.829
ylbJ
spore_ylbJ: sporulation integral membrane protein YlbJ; [S] COG3314 Uncharacterized protein conserved in bacteria.
 
   
 0.810
spoIIIAB
spore_III_AB: stage III sporulation protein AB.
  
  
 0.809
spoIIM
spo_II_M: stage II sporulation protein M; [S] COG1300 Uncharacterized membrane protein.
  
   
 0.784
spoIIIAA
spore_III_AA: stage III sporulation protein AA; [S] COG3854 Uncharacterized protein conserved in bacteria.
  
   
 0.780
spoIIID
spore_III_D: sporulation transcriptional regulator SpoIIID.
  
  
 0.777
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
 
     0.771
spoIIIAE
spore_III_AE: stage III sporulation protein AE.
  
  
 0.769
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.