STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61392.13D domain protein; [S] COG3584 Uncharacterized protein conserved in bacteria. (404 aa)    
Predicted Functional Partners:
AQM60430.1
3D domain protein; [S] COG3583 Uncharacterized protein conserved in bacteria.
 
  
0.910
entD
mannosyl-glycoendo-beta-N-acetylglucosamidase domain protein, possible enterotoxin; [G] COG4193 Beta- N-acetylglucosaminidase.
 
  
 0.552
AQM59066.1
ftsX-like permease family protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
     0.530
NPD11_666
NADPH-dependent FMN reductase family protein; [R] COG0655 Multimeric flavodoxin WrbA.
   
  
 0.487
NPD11_836
NADPH-dependent FMN reductase family protein; [R] COG0655 Multimeric flavodoxin WrbA.
   
  
 0.487
AQM61230.1
Pilus assembly, PilO family protein.
   
   0.474
AQM60609.1
nlpC/P60 family protein; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
  
0.457
AQM61153.1
Hypothetical protein.
       0.425
rsmB
16S rRNA (cytosine(967)-C(5))-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.416
AQM59716.1
Thermophilic metalloprotease family protein; [E] COG2309 Leucyl aminopeptidase (aminopeptidase T).
  
     0.401
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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