STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_297Phage integrase family protein; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. (330 aa)    
Predicted Functional Partners:
NPD11_251
ftsK/SpoIIIE family protein; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
   
 0.538
NPD11_457
Hypothetical protein; Phage integrase, N-terminal SAM-like domain protein; [L] COG0582 Integrase; Belongs to the 'phage' integrase family.
  
  
 0.524
AQM60286.1
[R] COG1040 Predicted amidophosphoribosyltransferases.
   
    0.513
AQM60860.1
UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein; [E] COG0287 Prephenate dehydrogenase.
  
    0.495
NPD11_340
Resolvase, N terminal domain protein; [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
  
 0.490
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
  
 0.487
dnaE
Polc: DNA polymerase III, alpha subunit; [L] COG0587 DNA polymerase III, alpha subunit.
 
  
 0.479
whiA
LAGLIDADG-like domain protein; Involved in cell division and chromosome segregation.
   
    0.475
AQM59390.1
Hypothetical protein.
  
     0.447
purR
purR_Bsub: pur operon repressor PurR; [F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
   
    0.424
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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