STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61021.1spore_ger_x_C: germination, Ger(x)C family protein. (377 aa)    
Predicted Functional Partners:
AQM58680.1
2A0309: spore germination family protein.
 
  
 0.972
AQM61491.1
GerA spore germination family protein.
 
  
 0.920
AQM60211.1
Hypothetical protein.
  
     0.606
AQM61139.1
NAD(P)-binding family protein; [H] COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
  
     0.568
NPD11_260
Major Facilitator Superfamily protein; [G] COG0738 Fucose permease.
  
    0.556
AQM61391.1
GerA spore germination family protein.
 
  
 0.526
AQM60366.1
Transcriptional regulator PadR-like family protein; [K] COG1695 Predicted transcriptional regulators.
  
     0.462
AQM59319.1
[P] COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.
  
     0.442
AQM58779.1
Septum formation initiator family protein.
  
     0.439
AQM59786.1
spore_ger_x_C: germination, Ger(x)C family protein.
  
   
 0.415
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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