STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM58671.1Binding--dependent transport system inner membrane component family protein; [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II. (260 aa)    
Predicted Functional Partners:
AQM61189.1
Binding--dependent transport system inner membrane component family protein; [E] COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
0.999
AQM58732.1
Bacterial extracellular solute-binding family protein; [E] COG0687 Spermidine/putrescine-binding periplasmic protein.
  
 0.998
NPD11_837
Bacterial extracellular solute-binding family protein; [E] COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 0.998
potA
Polyamine ABC transporter, ATP-binding family protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.996
AQM59244.1
ABC transporter family protein; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
  
 0.887
AQM60197.1
Helix-turn-helix family protein; [K] COG1396 Predicted transcriptional regulators.
 
     0.807
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.506
AQM60549.1
S4 domain protein; [J] COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
   
    0.493
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
   
  
 0.424
NPD11_745
Glycosyl hydrolase 85 family protein; [G] COG4724 Endo-beta-N-acetylglucosaminidase D.
   
    0.410
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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