STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_30[T] COG3103 SH3 domain protein. (589 aa)    
Predicted Functional Partners:
AQM59252.1
[N] COG5492 Bacterial surface proteins containing Ig-like domains.
 
  
0.604
AQM60150.1
N-acetylmuramoyl-L-alanine amidase family protein.
  
  
 0.600
AQM60609.1
nlpC/P60 family protein; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
  
0.595
AQM60298.1
PPIC-type PPIASE domain protein; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
 
  
0.549
NPD11_31
ACT domain protein; [E] COG0460 Homoserine dehydrogenase.
 
     0.543
AQM60884.1
Rhomboid family protein; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
 
 0.526
NPD11_29
Amidinotransferase family protein; [E] COG1834 N-Dimethylarginine dimethylaminohydrolase.
  
    0.522
NPD11_416
Phage tail tape measure, family, core region domain protein.
  
  
 0.520
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
 
    0.516
NPD11_188
[RTKL] COG0515 Serine/threonine protein kinase.
 
  
 0.492
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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