STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_34ABC transporter family protein; [V] COG1131 ABC-type multidrug transport system, ATPase component. (292 aa)    
Predicted Functional Partners:
NPD11_33
Bacterial regulatory s, gntR family protein; [K] COG1725 Predicted transcriptional regulators.
 
  
 0.949
NPD11_35
ABC-2 transporter family protein.
       0.782
NPD11_36
ABC-2 transporter family protein.
       0.782
NPD11_861
ABC-2 transporter family protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
  
 0.445
NPD11_37
SIS domain protein; [K] COG1737 Transcriptional regulators.
       0.444
AQM60726.1
Putative membrane protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.429
AQM60400.1
ABC-2 transporter family protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.420
NPD11_615
ABC-2 transporter family protein; [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.420
NPD11_32
Hypothetical protein.
       0.403
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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