STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_342[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (365 aa)    
Predicted Functional Partners:
NPD11_347
[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.928
AQM60439.1
[M] COG0744 Membrane carboxypeptidase (penicillin-binding protein).
  
  
 0.920
ytfJ
spore_ytfJ: sporulation protein YtfJ; [S] COG3874 Uncharacterized conserved protein.
 
    0.769
NPD11_343
Hypothetical protein.
  
    0.700
NPD11_341
Oxidoreductase FAD-binding domain protein; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
       0.654
NPD11_965
RNase H superfamily protein.
   
    0.463
NPD11_154
spoVD_pbp: stage V sporulation protein D; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
  
 0.443
ddl
D-alanine--D-alanine ligase family protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
  
 0.438
spmA
Nucleoside recognition family protein; [R] COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis.
  
  
 0.424
spmB
[S] COG0700 Uncharacterized membrane protein.
  
  
 0.420
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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