Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_347[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (397 aa)    
Predicted Functional Partners:
NPD11_154
spoVD_pbp: stage V sporulation protein D; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.959
AQM58647.1
[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.951
NPD11_342
[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.928
NPD11_997
D-Ala-D-Ala carboxypeptidase 3 family protein; [M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.928
AQM60802.1
Hypothetical protein; Penicillin-binding 5, C-terminal domain protein; [M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.924
AQM58724.1
[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
  
 
 0.918
NPD11_841
[M] COG1876 D-alanyl-D-alanine carboxypeptidase.
    
 0.912
AQM60439.1
[M] COG0744 Membrane carboxypeptidase (penicillin-binding protein).
     
 0.907
spoIIP
spore_II_P: stage II sporulation P family protein.
  
  
 0.710
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
    0.647
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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