Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
spoIIIAGspore_III_AG: stage III sporulation protein AG. (202 aa)    
Predicted Functional Partners:
NPD11_367
spoIIIAH-like family protein.
 
  
 0.990
spoIIIAE
spore_III_AE: stage III sporulation protein AE.
 
  
 0.985
spoIIIAA
spore_III_AA: stage III sporulation protein AA; [S] COG3854 Uncharacterized protein conserved in bacteria.
 
  
 0.985
spoIIIAB
spore_III_AB: stage III sporulation protein AB.
 
  
 0.982
spoIIIAF
spore_III_AF: stage III sporulation protein AF.
 
  
 0.981
spoIIIAD
spore_III_AD: stage III sporulation protein AD.
 
  
 0.978
spoIIIAC
spore_III_AC: stage III sporulation protein AC.
 
  
 0.970
spoIVB
spore_IV_B: stage IV sporulation protein B; [M] COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
   
 0.857
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.836
spoIIID
spore_III_D: sporulation transcriptional regulator SpoIIID.
  
  
 0.827
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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