Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
NPD11_397Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (232 aa)    
Predicted Functional Partners:
NPD11_396
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
 0.996
AQM60856.1
GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain.
 
 
 0.916
AQM60947.1
[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
  
 
0.907
AQM59725.1
GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain.
 
 
  
 0.902
AQM60003.1
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.871
NPD11_665
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.857
AQM60597.1
[T] COG0642 Signal transduction histidine kinase.
   0.843
AQM59022.1
[T] COG0642 Signal transduction histidine kinase.
 
 
 0.842
AQM60689.1
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.832
NPD11_94
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.830
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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