STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_407Glycosyl hydrolases 25 family protein; [M] COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase). (298 aa)    
Predicted Functional Partners:
NPD11_408
Putative membrane protein.
       0.554
NPD11_409
Putative imm.
       0.533
AQM60551.1
Cell wall binding repeat family protein; [R] COG5263 FOG: Glucan-binding domain (YG repeat).
 
 
  
 0.485
srtB-2
sortase_srtB: sortase, SrtB family; [S] COG4509 Uncharacterized protein conserved in bacteria.
  
     0.451
srtB
sortase_srtB: sortase, SrtB family; [S] COG4509 Uncharacterized protein conserved in bacteria.
  
     0.441
NPD11_410
Hypothetical protein.
       0.439
NPD11_411
Hypothetical protein.
       0.439
NPD11_406
Hypothetical protein.
       0.435
NPD11_414
Putative phage structural domain protein.
       0.432
NPD11_415
Phage tail family protein.
  
    0.432
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.