Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_41Metal-sensitive transcriptional repressor family protein; [S] COG1937 Uncharacterized protein conserved in bacteria. (99 aa)    
Predicted Functional Partners:
NPD11_40
Sodium/calcium exchanger family protein; [P] COG0530 Ca2+/Na+ antiporter.
       0.714
AQM60180.1
Metal-sensitive transcriptional repressor family protein; [S] COG1937 Uncharacterized protein conserved in bacteria.
  
     0.599
ccmA-2
ccmA: heme ABC exporter, ATP-binding protein CcmA; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.
       0.516
NPD11_39
Hypothetical protein.
       0.500
cadA
ATPase-IB2_Cd: cadmium-translocating P-type ATPase; [P] COG2217 Cation transport ATPase.
 
  
 0.469
NPD11_279
Rhodanese-like domain protein; [P] COG0607 Rhodanese-related sulfurtransferase.
 
   
 0.431
NPD11_719
hlyD secretion family protein; [M] COG0845 Membrane-fusion protein.
  
  
 0.414
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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