STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_427portal_SPP1: phage portal protein, SPP1 family. (474 aa)    
Predicted Functional Partners:
NPD11_429
[L] COG3728 Phage terminase, small subunit.
 
  
 0.959
NPD11_426
phageSPP1_gp7: phage head morphogenesis, SPP1 gp7 family domain protein; [T] COG5585 NAD+--asparagine ADP-ribosyltransferase.
 
    0.956
NPD11_428
Phage_term_2: phage terminase, large subunit, PBSX family; [R] COG1783 Phage terminase large subunit.
 
  
 0.956
NPD11_424
Phage minor structural GP20 family protein.
 
  
 0.903
NPD11_425
Cysteine-rich CPCC family protein.
       0.773
NPD11_430
Hypothetical protein.
       0.746
NPD11_431
Hypothetical protein.
 
  
 0.621
NPD11_423
capsid_maj_N4: major capsid protein, N4-gp56 family.
       0.484
NPD11_420
Bacteriophage HK97-gp10, tail-component family protein.
       0.482
NPD11_422
Phage gp6-like head-tail connector family protein.
       0.471
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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