STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_456Hypothetical protein. (154 aa)    
Predicted Functional Partners:
NPD11_453
Phage antirepressor KilAC domain protein; [S] COG3645 Uncharacterized phage-encoded protein.
       0.672
NPD11_455
Helix-turn-helix family protein.
       0.664
NPD11_457
Hypothetical protein; Phage integrase, N-terminal SAM-like domain protein; [L] COG0582 Integrase; Belongs to the 'phage' integrase family.
  
  
 0.657
NPD11_454
XRE family plasmid maintenance system antidote domain protein.
       0.533
NPD11_452
Hypothetical protein.
       0.461
NPD11_444
Conserved hypothetical protein; [L] COG3935 Putative primosome component and related proteins.
 
    0.451
AQM61048.1
spore_CotS: spore coat, CotS family protein.
  
     0.428
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
       0.426
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.