Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_459spore_YlmC_YmxH: sporulation, YlmC/YmxH family protein; [S] COG1873 Uncharacterized conserved protein. (92 aa)    
Predicted Functional Partners:
sigG
RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.902
sigE
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.870
NPD11_462
Sporulation factor SpoIIGA family protein; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
 
   
 0.853
spoIIR
spore_II_R: stage II sporulation protein R.
 
     0.792
ytfJ
spore_ytfJ: sporulation protein YtfJ; [S] COG3874 Uncharacterized conserved protein.
  
  
 0.780
NPD11_250
Peptidase S49 family protein; [OU] COG0740 Protease subunit of ATP-dependent Clp proteases.
 
   
 0.768
spoIIIAE
spore_III_AE: stage III sporulation protein AE.
  
     0.758
spoVAC
spore_V_AC: stage V sporulation protein AC.
  
    0.752
spoIIIAD
spore_III_AD: stage III sporulation protein AD.
  
     0.751
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
     0.750
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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