STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_466pilT_fam: twitching motility family protein; [NU] COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT. (351 aa)    
Predicted Functional Partners:
AQM59814.1
Type II secretion system (T2SS), F family protein; [NU] COG1459 Type II secretory pathway, component PulF.
 
  
 0.835
NPD11_384
Type II secretion system (T2SS), F family protein; [NU] COG1459 Type II secretory pathway, component PulF.
 
  
 0.835
NPD11_715
Type II secretion system (T2SS), F family protein; [NU] COG1459 Type II secretory pathway, component PulF.
 
  
 0.835
AQM61199.1
Type IV leader peptidase family protein; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
   
 0.823
NPD11_712
Type IV leader peptidase family protein; [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
   
 0.823
sigK
RNA polymerase sigma-K factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.674
NPD11_465
Cell division FtsA family protein; [D] COG0849 Actin-like ATPase involved in cell division.
     
 0.631
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
       0.609
NPD11_711
Type IV pilus assembly PilM, family protein; [NU] COG4972 Tfp pilus assembly protein, ATPase PilM.
 
   
 0.584
NPD11_993
TPR repeat family protein.
     
 0.582
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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