STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_468[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2. (529 aa)    
Predicted Functional Partners:
mrdB
rodA_shape: rod shape-determining protein RodA; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 
 0.867
ftsW
ftsW: cell division protein FtsW; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 0.834
sigK
RNA polymerase sigma-K factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.725
AQM59971.1
Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 0.704
AQM61046.1
Signal peptidase (SPase) II family protein.
 
     0.680
AQM60089.1
Mur ligase middle domain protein; [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase.
 
 
 0.658
cphA
Cya_phycin_syn: cyanophycin synthetase; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; Belongs to the MurCDEF family.
 
 
 0.657
AQM59686.1
Glucose / Sorbosone dehydrogenase family protein.
  
     0.655
NPD11_977
3'-5' exonuclease family protein; [L] COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
   
 0.646
mltG
yceG-like family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
     
 0.629
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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