STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_470Peptidase U32 family protein; [O] COG0826 Collagenase and related proteases. (408 aa)    
Predicted Functional Partners:
NPD11_471
Spermine/spermidine synthase family protein; [R] COG4122 Predicted O-methyltransferase.
 
  
 0.931
udk
Udk: uridine kinase; [F] COG0572 Uridine kinase.
  
    0.887
mltG
yceG-like family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
    0.822
typA
typA_BipA: GTP-binding protein TypA/BipA; [T] COG1217 Predicted membrane GTPase involved in stress response.
  
    0.689
NPD11_468
[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
       0.617
rnj
beta-CASP ribonuclease, RNase J family protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.535
sigK
RNA polymerase sigma-K factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.521
NPD11_475
Ferric uptake regulator family protein; [P] COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
       0.497
NPD11_466
pilT_fam: twitching motility family protein; [NU] COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
       0.479
NPD11_476
Conserved hypothetical protein; [S] COG3906 Uncharacterized protein conserved in bacteria; Belongs to the UPF0473 family.
       0.479
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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