STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduDkduD: 2-deoxy-D-gluconate 3-dehydrogenase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (260 aa)    
Predicted Functional Partners:
kduI1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
 
 0.997
NPD11_521
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family.
 0.954
NPD11_525
Glycosyl Hydrolase Family 88 family protein.
 
   
 0.884
rpiB
rpiB: ribose 5-phosphate isomerase B; [G] COG0698 Ribose 5-phosphate isomerase RpiB.
  
 
 0.831
eda
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
  
 0.815
rpe
Rpe: ribulose-phosphate 3-epimerase; [G] COG0036 Pentose-5-phosphate-3-epimerase.
  
 
 0.813
NPD11_541
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family.
 
 
 0.618
NPD11_524
Heparinase II/III-like family protein.
 
     0.615
AQM59118.1
4Fe-4S binding domain protein; [C] COG0778 Nitroreductase.
  
 
 0.564
fabF
Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.549
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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